Dr. Deniz Akdemir | Decision-making and Problem-solving | Best Researcher Award
NMDP, United States
Author Profile
🎓 Early Academic Pursuits
Deniz Akdemir’s journey into the world of data science and statistical genomics began with a strong academic foundation that combined both business acumen and analytical prowess. He earned his B.A. in Business Administration from the prestigious Middle East Technical University (METU) in Ankara, Turkey, in 1999. His growing interest in analytical modeling and decision-making led him to pursue a Master of Science in Statistics at METU, which he completed in 2003.
Building on this momentum, he continued his academic journey in the United States, obtaining both a Master of Arts in Applied Statistics (2004) and a Ph.D. in Statistics (2009) from Bowling Green State University. During his doctoral studies, Akdemir laid the groundwork for what would become a distinguished career in high-dimensional data analysis and computational biology. His academic training equipped him with a deep understanding of statistical theory while nurturing his talent for interdisciplinary research—a theme that would define much of his later work.
💼 Professional Endeavors
Dr. Akdemir’s professional trajectory is a blend of academia, industry, and applied research. Following the completion of his Ph.D., he held a Postdoctoral Research Associate position at University College Dublin from 2019 to 2021. During this time, he contributed to the advancement of statistical methodologies in genomic selection and experimental design.
He transitioned into the healthcare and clinical data landscape through his role at the National Marrow Donor Program (NMDP). Initially joining as a Clinical Data Scientist in 2021, Akdemir’s exceptional performance and scientific insight led to his promotion as Senior Clinical Data Scientist in 2023. At NMDP, he applies cutting-edge statistical and machine learning techniques to optimize bone marrow transplant outcomes and improve patient care—a prime example of research translating into life-saving real-world impact.
In parallel, he founded and operates StatGen Consulting, a firm that provides expert consulting services in statistical genomics and machine learning. Through StatGen, he bridges the gap between theoretical development and industry application, fostering innovation across academia, agriculture, and clinical healthcare.
🔬 Contributions and Research Focus
Deniz Akdemir is widely recognized for his pioneering contributions to statistical genomics, machine learning, and computational biology. His research revolves around developing statistical methodologies that address complex biological questions, particularly in the domains of genomic prediction, multi-trait modeling, genotype-by-environment interactions, and optimization of breeding programs.
His innovative software tools, such as TrainSel (R) and trainselpy (Python), have been instrumental in enhancing the selection of optimal training populations, improving predictive accuracy in genomic selection models. These tools are used by researchers and practitioners worldwide to streamline data-driven breeding and selection strategies.
With over 3,400 citations, 86 publications, and a growing international reputation, Akdemir’s work is a cornerstone in the statistical modeling of genomic data. His ability to integrate Bayesian methods, high-dimensional statistics, deep learning, and causal inference into biological frameworks has led to significant advances in both plant breeding and human health research.
🏆 Accolades and Recognition
While not one to seek the spotlight, Deniz Akdemir’s work has earned considerable recognition within the scientific community. His Google Scholar citation count of over 3,400 reflects the widespread adoption and influence of his methodologies. Collaborations with prominent researchers such as Jean-Luc Jannink, Mark Sorrells, Jose Crossa, and Jessica Rutkoski have resulted in high-impact publications that drive global conversations in genetics and data science.
He is also widely respected for his collaborative spirit and leadership in large-scale research projects, and his work is often cited in discussions of best practices in genomic prediction and breeding program optimization.
🌍 Impact and Influence
Dr. Akdemir’s influence extends across disciplines and continents. His statistical tools are not confined to academic research—they have practical applications in agriculture, biotechnology, and clinical medicine. His contributions help shape crop resilience strategies in the face of climate change, and inform personalized treatment strategies in hematopoietic stem cell transplantation.
Beyond the numbers, Akdemir is a mentor, educator, and thought leader. His ability to translate complex statistical theories into practical insights enables teams to make better decisions based on data. He regularly contributes to open-source communities, champions reproducible research, and supports collaborative networks across universities and institutes worldwide.
🌟 Legacy and Future Contributions
Looking ahead, Deniz Akdemir is poised to further his impact in areas where statistical innovation intersects with biological complexity. His vision for the future includes expanding the use of machine learning algorithms in healthcare, continuing to develop statistical tools that enhance breeding program efficiency, and deepening his work on genomic prediction frameworks that can transform personalized medicine.
As he continues to build bridges between disciplines and create tools that shape the future of data-driven research, Dr. Akdemir’s legacy will be that of a visionary who brought clarity, precision, and real-world impact to some of the most complex challenges in science and healthcare.
Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and More
Authors: J. Spindel, H. Begum, D. Akdemir, P. Virk, B. Collard, E. Redona, G. Atlin, J.-L. Jannink, S. McCouch
Journal: PLoS Genetics
Year: 2015
Integrating Environmental Covariates and Crop Modeling into the Genomic Selection Framework to Predict Genotype by Environment Interactions
Authors: N. Heslot, D. Akdemir, M.E. Sorrells, J.-L. Jannink
Journal: Theoretical and Applied Genetics
Year: 2014
Training Set Optimization under Population Structure in Genomic Selection
Authors: J. Isidro, J.-L. Jannink, D. Akdemir, J. Poland, N. Heslot, M.E. Sorrells
Journal: Theoretical and Applied Genetics
Year: 2015
Genome-Wide Prediction Models That Incorporate de novo GWAS Are a Powerful New Tool for Tropical Rice Improvement
Authors: J.E. Spindel, H. Begum, D. Akdemir, B. Collard, E. Redoña, J.-L. Jannink, S. McCouch
Journal: Heredity
Year: 2016
Squamous Cell and Adenosquamous Carcinomas of the Gallbladder: Clinicopathological Analysis of 34 Cases Identified in 606 Carcinomas
Authors: J.C. Roa, O. Tapia, A. Cakir, O. Basturk, N. Dursun, D. Akdemir, B. Saka, V. Bagci, I.O. Dursun, N. Adsay
Journal: Modern Pathology
Year: 2011